Internet 2
Learn more about Internet 2 at UMDNJ

Getting Connected

IST is committed to making your transition to campus as smooth as possible.
Learn More 

Announcement - Rutgers-UMDNJ Integration: UMDNJ will be transferred to Rutgers, effective July 1, 2013. As a result of this integration, you will see changes to this website. To learn more about how IT services are changing related to the integration, visit the OIT Rutgers-UMDNJ Integration site.
======================================

High performance computing (HPC)

Scientific Staff

 

Leslie P. Michelson, Ph.D.

 

Peicheng Du, Ph.D.

dupe@ca.rutgers.edu

973.972.7412

 

Dr. Du obtained his Ph.D. from Rutgers University in 2004 in computational molecular biology. Afterwards he received postdoc training at Albert Einstein College of Medicine and IBM computational biology center in Yorktown Heights, NY.  Dr. Du has extensive training and experiences in biological sequence and structure analysis, proteomics, simulation, data mining, and software development.
Dr. Du's recent interest is primarily in the area of next generation sequencing (NGS) and its applications in genetics and gene expression studies. With the incoming flood of NGS data, there is much demand for advanced hardware, software, and skinware (i.e., computational scientists). Some of his projects and collaborations include:  algorithm and software for RNA-seq to detect alternative splcing isoforms; study of host-pathogen interaction in TB using RAN-seq; detection of  genetic variations among  latent TB strains; human exome resequencing to find genetic variations associated with aggressive peridontitis; study of protein-DNA binding using Chip-Seq.  

Recent Publications

Suits F., Lepre J., Du P., Bischoff R., Horvatovich P. (2008) A New Two-Dimensional Method for Time Aligning Liquid Chromatography-Mass Spectrometry Data, Analytical Chemistry, 80(9), 3095-3104

Du, P., Stolovitzky, G., Horvatovich, P., Bischoff, R., Lim, J., Suits, F.(2008)  A Noise Model for Mass Spectrometry Based Proteomics, Bioinformatics, 24(8), 1070-1077

Rajagopalan, S., Kawachi, N., Du, P., Nieves, E., Belbin T.J., Negassa, A., Angeletti, R.H., Prystowsky, M.B. (2007) Global Proteomic Analysis Distinguishes Biologic Differences In Head and Neck Squamous Carcinoma, Laboratory Investigations, 87(8), 755-766

Du, P., Rajagopalan, S., Angeletti R.H. and Prystowsky, M.B. (2007) Data Reduction of Isotope-resolved LC-MS spectra Bioinformatics, 23, 1394-1400

Du, P., Angeletti R.H. (2006) Deconvolution of High-resolution Mass Spectra Using Variable Selection and Quantized Peptide Mass Distribution, Analytical Chemistry, 78, 3385-3392


Copyright ©2013, Rutgers, The State University of New Jersey, an equal opportunity, affirmative action institution.