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Announcement - Rutgers-UMDNJ Integration: UMDNJ will be transferred to Rutgers, effective July 1, 2013. As a result of this integration, you will see changes to this website. To learn more about how IT services are changing related to the integration, visit the OIT Rutgers-UMDNJ Integration site.

High performance computing (HPC)

Publications and Presentations

  1. Lazzarinia, L, Rosenfeld JA, Huard RC, Hill V, Lapa e Silva JR, DeSalle R, Rastogi N, Ho JL. (2011) Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach.   Infection, Genetics and Evolution.  In Press

  2. Samoshkin A, Dulev S, Loukinov D, Rosenfeld JA, Strunnikov AV. (2011) Condensin dysfunction in human cells induces nonrandom chromosomal breaks in anaphase, with distinct patterns for both unique and repeated genomic regions. Chromosoma. In Press

  3. Sushko I, Novotarskyi S, Körner R, Pandey AK, Rupp M, Teetz W, Brandmaier S, Abdelaziz A, Prokopenko VV, Tanchuk VY, Todeschini R, Varnek A, Marcou G, Ertl P, Potemkin V, Grishina M, Gasteiger J, Schwab C, Baskin II, Palyulin VA, Radchenko EV, Welsh WJ, Kholodovych V, Chekmarev D, Cherkasov A, Aires-de-Sousa J, Zhang QY, Bender A, Nigsch F, Patiny L, Williams A, Tkachenko V, Tetko IV Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information // J Comput Aided Mol Des. 2011, 25, 533-554.

  4. Gubskaya AV, Bonates TO, Kholodovych V, Hammer P, Welsh WJ, Langer R, Kohn J Logical Analysis of Data in Structure-Activity Investigation of Polymeric Gene Delivery // Macromolecular Theory & Simulations 2011, 20(4), 275-285.

  5. Lienau EK, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN and Planet PJ. The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life. // Cladistics. 2010, 26, 1-11

  6. Rosenfeld JA, Malhotra AK, Lencz T. Novel multi-nucleotide polymorphisms in the human genome characterized by whole genome and exome sequencing. // Nucleic Acids Research 2010, 38(18): 6102-6111

  7. Suits F., Lepre J., Du P., Bischoff R., Horvatovich P. A New Two-Dimensional Method for Time Aligning Liquid Chromatography-Mass Spectrometry Data // Analytical Chemistry 2008, 80(9), 3095-3104

  8. Du, P., Stolovitzky, G., Horvatovich, P., Bischoff, R., Lim, J., Suits, F. A Noise Model for Mass Spectrometry Based Proteomics // Bioinformatics, 2008, 24(8), 1070-1077


Mroug G, Kholodovych V, Shybyryn O, Frasynuk M, Beluga O, Fedoryak O.  Development of Activated Cdc42-Associated Kinase (Ack1) Inhibitors, New Agents for Treatment of Prostate Cancer.  The Gordon Research Conference on Bioorganic Chemistry, June 2011, Proctor Academy, Andover, NH


  • 2010: Building and Installing Software – HPC in Education, Kean University

  • 2009: Grid Computing and the Open Science Grid Workshop – Provost Series Workshop, NJIT

  • 2009: Grid Computing Introduction,


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